PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011557
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family YABBY
Protein Properties Length: 242aa    MW: 26910.3 Da    PI: 8.5091
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011557genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.34.7e-71342032170
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkeelleelkveeenlksnvekeesastsvssek 100
                ++  s+eq+Cyv+Cn C+t+lavsvP  slfk+vtvrCGhCt+ll vn++      + + ++l++s+  +  ++   +  + +sn+  ++   t+++  +
  Cla011557  34 HHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQfHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGM 133
                67889*****************************************888777655555424577777776666655555555666655555555555555 PP

      YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 s+  ++e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl
  Cla011557 134 PSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 203
                589999**************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.0E-6939203IPR006780YABBY protein
SuperFamilySSF470951.7E-7148196IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.0E-4151197IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSSSSSSSSP TSTTTATTTT TLSQQQHLQQ QLDHHLPSPE QLCYVHCNIC DTVLAVSVPC  60
CSLFKTVTVR CGHCTNLLPV NMRGLLLPSP NQFHQLGHSF FSPNSHNILE NMATPNSNYL  120
INQFGATTNN FGMPSRGVTD ELPRPPAINR PPEKRQRVPS AYNRFIKDEI QRIKSVNPDI  180
SHREAFSAAA KNWAHFPHIH FGLMPDQTVK KTNIRQQEGD TQNVLMKDNG FYASANVGVS  240
HF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147586.11e-142PREDICTED: axial regulator YABBY 5-like
SwissprotO221528e-78YAB1_ARATH; Axial regulator YABBY 1
TrEMBLA0A0A0KKT01e-142A0A0A0KKT0_CUCSA; Axial regulator YABBY1
STRINGVIT_02s0154g00070.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20403490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-77YABBY family protein